Package: pguIMP 0.1.1

Jorn Lotsch

pguIMP: Visually Guided Preprocessing of Bioanalytical Laboratory Data

Reproducible cleaning of biomedical laboratory data using visualization, error correction, and transformation methods implemented as interactive R notebooks. A detailed description of the methods ca ben found in Malkusch, S., Hahnefeld, L., Gurke, R. and J. Lotsch. (2021) <doi:10.1002/psp4.12704>.

Authors:Sebastian Malkusch [aut], Jorn Lotsch [aut, cre]

pguIMP_0.1.1.tar.gz
pguIMP_0.1.1.zip(r-4.7)pguIMP_0.1.1.zip(r-4.6)pguIMP_0.1.1.zip(r-4.5)
pguIMP_0.1.1.tgz(r-4.6-any)pguIMP_0.1.1.tgz(r-4.5-any)
pguIMP_0.1.1.tar.gz(r-4.7-any)pguIMP_0.1.1.tar.gz(r-4.6-any)
pguIMP_0.1.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
pguIMP/json (API)

# Install 'pguIMP' in R:

install.packages('pguIMP', repos = c('https://jornlotsch.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/jornlotsch/pguimp/issues

Uses libs:

openjdk– OpenJDK Java runtime, using Hotspot JIT

On CRAN:

openjdk

2.70 score 1 scripts 240 downloads 32 exports 217 dependencies

Last updated from:604ac4e396. Checks:9 OK. Indexed: yes.

Target	Result	Time
linux-devel-x86_64	OK	299
source / vignettes	OK	325
linux-release-x86_64	OK	264
macos-release-arm64	OK	191
macos-oldrel-arm64	OK	154
windows-devel	OK	220
windows-release	OK	211
windows-oldrel	OK	197
wasm-release	OK	192

Exports:centralValue dLogLikelihood importDataSet knnImputation nnk normalDistribution pgu.correlator pgu.corrValidator pgu.data pgu.delegate pgu.explorer pgu.exporter pgu.file pgu.filter pgu.importer pgu.imputation pgu.limitsOfQuantification pgu.missings pgu.missingsCharacterizer pgu.model pgu.normalizer pgu.normDist pgu.optimizer pgu.outliers pgu.regressor pgu.reporter pgu.status pgu.transformator pgu.validator pguIMP sLogLikelihood transposeTibble

Dependencies:abind askpass backports base64enc bbmle bbotk bdsmatrix bit bit64 boot broom bslib cachem car carData cellranger checkmate class cli clipr cluster codetools coin colorspace commonmark cowplot cpp11 crayon crosstalk curl data.table DataVisualizations dbscan DEoptimR Deriv DescTools digest doBy dplyr DT e1071 evaluate Exact expm farver fastmap finalfit fit.models fontawesome forcats foreach forecast foreign Formula fracdiff fs future future.apply generics GGally ggplot2 ggstats ggthemes gld glmnet globals glue GPArotation gridExtra gtable haven highr Hmisc hms htmlTable htmltools htmlwidgets httpuv httr isoband iterators jomo jquerylib jsonlite knitr labeling laeken later lattice lazyeval lgr libcoin lifecycle listenv lme4 lmom lmtest magrittr MASS Matrix MatrixModels matrixStats memoise mgcv mice microbenchmark mime minqa mirai mitml mlbench mlr3 mlr3learners mlr3measures mlr3misc mlr3pipelines mlr3tuning mnormt modelr modeltools multcomp multcompView mvtnorm nanonext nlme nloptr nnet nortest numDeriv openssl ordinal otel outliers palmerpenguins pan paradox parallelly patchwork pbkrtest pcaPP pillar pkgconfig plotly plyr pracma prettyunits pROC progress promises proxy PRROC psych purrr quantreg R6 ranger rappdirs rbibutils RColorBrewer rcompanion Rcpp RcppArmadillo RcppEigen RcppParallel Rdpack readr readxl reformulas rematch reshape2 rJava rlang rmarkdown robust robustbase rootSolve rpart rrcov rstudioapi RWeka RWekajars S7 sandwich sass scales shape shiny sourcetools sp SparseM stringi stringr survival sys TH.data tibble tidyr tidyselect timeDate tinytex tzdb ucminf urca utf8 uuid vcd vctrs VIM viridisLite vroom withr writexl xfun xgboost xtable yaml zoo

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Visually Guided Preprocessing of Bioanalytical Laboratory Data	pguIMP-package
centralValue	centralValue
dLogLikelihood	dLogLikelihood
importDataSet	importDataSet
knnImputation	knnImputation
nnk	nnk
normalDistribution	normalDistribution
pgu.correlator	pgu.correlator
pgu.corrValidator	pgu.corrValidator
pgu.data	pgu.data
pgu.delegate	pgu.delegate
pgu.explorer	pgu.explorer
pgu.exporter	pgu.exporter
pgu.fie	pgu.file
pgu.filter	pgu.filter
pgu.importer	pgu.importer
pgu.imputation	pgu.imputation
pgu.limitsOfQuantification	pgu.limitsOfQuantification
pgu.missings	pgu.missings
pgu.missingsCharacterizer	pgu.missingsCharacterizer
pgu.model	pgu.model
pgu.normalizer	pgu.normalizer
pgu.normDist	pgu.normDist
pgu.optimizer	pgu.optimizer
pgu.outliers	pgu.outliers
pgu.regressor	pgu.regressor
pgu.reporter	pgu.reporter
pgu.status	pgu.status
pgu.transformator	pgu.transformator
pgu.validator	pgu.validator
pguIMP	pguIMP
dLogLikelihood	sLogLikelihood
transposeTibble	transposeTibble